b1472479cb
Questions for functionalities_test.py corrected some fixes Redo and implementation of everything path related now using pathlib.Path
241 lines
8.6 KiB
Python
241 lines
8.6 KiB
Python
from pathlib import Path
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from tokenize import String
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from typing import List, Dict
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from tqdm import tqdm
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import matplotlib.pyplot as plt
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import matplotlib.patches as mpatches
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import numpy as np
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from sklearn.decomposition import PCA
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import random
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import string
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def plot_output(output):
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""" Plotting the values of the final output """
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plt.figure()
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plt.imshow(output)
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plt.colorbar()
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plt.show()
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def plot_loss(loss_array, directory, batch_size=1):
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""" Plotting the evolution of the loss function."""
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fig = plt.figure()
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fig.set_figheight(10)
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fig.set_figwidth(12)
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for i in range(len(loss_array)):
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plt.plot(loss_array[i], label=f"Last loss value: {str(loss_array[i][len(loss_array[i])-1])}")
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plt.legend()
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plt.xlabel("Epochs")
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plt.ylabel("Loss")
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directory = Path(directory)
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filename = "nets_loss_function.png"
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file_path = directory / filename
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plt.savefig(str(file_path))
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plt.clf()
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def bar_chart_fixpoints(fixpoint_counter: Dict, population_size: int, directory: String, learning_rate: float,
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exp_details: String, source_check=None):
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""" Plotting the number of fixpoints in a barchart. """
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fig = plt.figure()
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fig.set_figheight(10)
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fig.set_figwidth(12)
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legend_population_size = mpatches.Patch(color="white", label=f"No. of nets: {str(population_size)}")
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learning_rate = mpatches.Patch(color="white", label=f"Learning rate: {str(learning_rate)}")
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epochs = mpatches.Patch(color="white", label=f"{str(exp_details)}")
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if source_check == "summary":
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plt.legend(handles=[legend_population_size, learning_rate, epochs])
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plt.ylabel("No. of nets/run")
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plt.title("Summary: avg. amount of fixpoints/run")
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else:
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plt.legend(handles=[legend_population_size, learning_rate, epochs])
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plt.ylabel("Number of networks")
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plt.title("Fixpoint count")
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plt.bar(range(len(fixpoint_counter)), list(fixpoint_counter.values()), align='center')
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plt.xticks(range(len(fixpoint_counter)), list(fixpoint_counter.keys()))
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directory = Path(directory)
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filename = f"{str(population_size)}_nets_fixpoints_barchart.png"
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filepath = directory / filename
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plt.savefig(str(filepath))
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plt.clf()
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def plot_3d(matrices_weights_history, directory, population_size, z_axis_legend, exp_name="experiment", is_trained="",
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batch_size=1):
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""" Plotting the the weights of the nets in a 3d form using principal component analysis (PCA) """
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fig = plt.figure()
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fig.set_figheight(10)
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fig.set_figwidth(12)
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pca = PCA(n_components=2, whiten=True)
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ax = plt.axes(projection='3d')
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loop_matrices_weights_history = tqdm(range(len(matrices_weights_history)))
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for i in loop_matrices_weights_history:
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loop_matrices_weights_history.set_description("Plotting weights 3D PCA %s" % i)
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weight_matrix, start_time = matrices_weights_history[i]
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weight_matrix = np.array(weight_matrix)
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n, x, y = weight_matrix.shape
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weight_matrix = weight_matrix.reshape(n, x * y)
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pca.fit(weight_matrix)
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weight_matrix_pca = pca.transform(weight_matrix)
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xdata, ydata = [], []
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for j in range(len(weight_matrix_pca)):
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xdata.append(weight_matrix_pca[j][0])
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ydata.append(weight_matrix_pca[j][1])
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zdata = np.arange(start_time, len(ydata)*batch_size+start_time, batch_size).tolist()
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ax.plot3D(xdata, ydata, zdata)
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ax.scatter(np.array(xdata), np.array(ydata), np.array(zdata), s=7)
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steps = mpatches.Patch(color="white", label=f"{z_axis_legend}: {len(matrices_weights_history)} steps")
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population_size = mpatches.Patch(color="white", label=f"Population: {population_size} networks")
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if z_axis_legend == "Self-application":
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trained = mpatches.Patch(color="white", label=f"Trained: true") if is_trained == "_trained" else mpatches.Patch(color="white", label=f"Trained: false")
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ax.legend(handles=[steps, population_size, trained])
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else:
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ax.legend(handles=[steps, population_size])
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ax.set_title(f"PCA Weights history")
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ax.set_xlabel("PCA X")
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ax.set_ylabel("PCA Y")
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ax.set_zlabel(f"Epochs")
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# FIXME: Replace this kind of operation with pathlib.Path() object interactions
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directory = Path(directory)
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directory.mkdir(parents=True, exist_ok=True)
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filename = f"{exp_name}{is_trained}.png"
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filepath = directory / filename
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if filepath.exists():
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letters = string.ascii_lowercase
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random_letters = ''.join(random.choice(letters) for _ in range(5))
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plt.savefig(f"{filepath.stem}_{random_letters}.png")
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else:
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plt.savefig(str(filepath))
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plt.show()
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def plot_3d_self_train(nets_array: List, exp_name: String, directory: String, batch_size: int):
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""" Plotting the evolution of the weights in a 3D space when doing self training. """
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matrices_weights_history = []
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loop_nets_array = tqdm(range(len(nets_array)))
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for i in loop_nets_array:
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loop_nets_array.set_description("Creating ST weights history %s" % i)
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matrices_weights_history.append( (nets_array[i].s_train_weights_history, nets_array[i].start_time) )
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z_axis_legend = "epochs"
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return plot_3d(matrices_weights_history, directory, len(nets_array), z_axis_legend, exp_name, "", batch_size)
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def plot_3d_self_application(nets_array: List, exp_name: String, directory_name: String, batch_size: int) -> None:
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""" Plotting the evolution of the weights in a 3D space when doing self application. """
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matrices_weights_history = []
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loop_nets_array = tqdm(range(len(nets_array)))
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for i in loop_nets_array:
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loop_nets_array.set_description("Creating SA weights history %s" % i)
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matrices_weights_history.append( (nets_array[i].s_application_weights_history, nets_array[i].start_time) )
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if nets_array[i].trained:
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is_trained = "_trained"
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else:
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is_trained = "_not_trained"
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# Fixme: Are the both following lines on the correct intendation? -> Value of "is_trained" changes multiple times!
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z_axis_legend = "epochs"
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plot_3d(matrices_weights_history, directory_name, len(nets_array), z_axis_legend, exp_name, is_trained, batch_size)
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def plot_3d_soup(nets_list, exp_name, directory):
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""" Plotting the evolution of the weights in a 3D space for the soup environment. """
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# This batch size is not relevant for soups. To not affect the number of epochs shown in the 3D plot,
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# will send forward the number "1" for batch size with the variable <irrelevant_batch_size>.
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irrelevant_batch_size = 1
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plot_3d_self_train(nets_list, exp_name, directory, irrelevant_batch_size)
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def line_chart_fixpoints(fixpoint_counters_history: list, epochs: int, ST_steps_between_SA: int,
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SA_steps, directory: String, population_size: int):
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""" Plotting the percentage of fixpoints after each iteration of SA & ST steps. """
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fig = plt.figure()
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fig.set_figheight(10)
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fig.set_figwidth(12)
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ST_steps_per_SA = np.arange(0, ST_steps_between_SA * epochs, ST_steps_between_SA).tolist()
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legend_population_size = mpatches.Patch(color="white", label=f"No. of nets: {str(population_size)}")
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legend_SA_steps = mpatches.Patch(color="white", label=f"SA_steps: {str(SA_steps)}")
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legend_SA_and_ST_runs = mpatches.Patch(color="white", label=f"SA_and_ST_runs: {str(epochs)}")
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legend_ST_steps_between_SA = mpatches.Patch(color="white", label=f"ST_steps_between_SA: {str(ST_steps_between_SA)}")
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plt.legend(handles=[legend_population_size, legend_SA_and_ST_runs, legend_SA_steps, legend_ST_steps_between_SA])
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plt.xlabel("Epochs")
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plt.ylabel("Percentage")
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plt.title("Percentage of fixpoints")
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plt.plot(ST_steps_per_SA, fixpoint_counters_history, color="green", marker="o")
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directory = Path(directory)
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filename = f"{str(population_size)}_nets_fixpoints_linechart.png"
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filepath = directory / filename
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plt.savefig(str(filepath))
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plt.clf()
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def box_plot(data, directory, population_size):
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fig, axs = plt.subplots(nrows=1, ncols=2, figsize=(10, 7))
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# ax = fig.add_axes([0, 0, 1, 1])
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plt.title("Fixpoint variation")
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plt.xlabel("Amount of noise")
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plt.ylabel("Steps")
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# data = numpy.array(data)
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# ax.boxplot(data)
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axs[1].boxplot(data)
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axs[1].set_title('Box plot')
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directory = Path(directory)
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filename = f"{str(population_size)}_nets_fixpoints_barchart.png"
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filepath = directory / filename
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plt.savefig(str(filepath))
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plt.clf()
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def write_file(text, directory):
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directory = Path(directory)
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filepath = directory / 'experiment.txt'
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with filepath.open('w+') as f:
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f.write(text)
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f.close()
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